SE2640464

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7432
  • Oryza sativa
  • SE2640464
  • CACTA
  • Ca4
  • Chr11:8713955-8714362
  • CAC
  • CACTACAAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
      A   ----TAATTGAGC     - C CCAAATTATTACAACAAAAAAATATTTCGTAGCAATATATTGTACTATTGCAATGATAATTTTTCTGTGGCAAATAATTATATTTTATTGCAACGATCTACAATCGTTGTTTTATTTAGTACTTTTGTTGCAATAGAAAATGAGATATCGCCACGAAAAATCTTACTGTTGCAAA
CACTAC AGA             TATTG C A                                                                                                                                                                               
|||||| |||             ||||| | |                                                                                                                                                                                
GTGATG TCT             ATGGT C T                                                                                                                                                                               
      A   TTTTTAGTAAACA     A - TTTTTTAGCACCGTAGTTAAGTTTTTAATACCGTTATTTATGTACAACGGTGTTAAAATTTTAGCAACGATCGACACCTTTATTTATCGCACCATCATCCAATAACGTTACTAAAAAAAATCACCATTATTTAAATCTACAACGGTGCCTAACCTACACCGATATCTTGTATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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