Plant MITE

SE2640465

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7433
Oryza sativa
SE2640465
CACTA
Ca5
Chr03:23901415-23902003
CAT
CATTGCTGGAGAAAGCATCTTT

Secondary structure and sequence

TSD TIR

5'

3'

             AGC      AC     A   - --      CTTTAGTCCCGGGTTGCAAACCGGGAACTCGAATCTGGGAGTCCCTATTAAAATAATTGGGACTAAAAATCCATCTTTTGTCCCGGTTGATGTTAACAATCGGGACTAAAGATGGTAGCGTCACGTGGCTCTGCTACATCTTAGTCCAATTTTTGTTTTTTTATTGTTTTTTGCTGCTTGCATTCCCCACGTCAAGTTGCTCCACTAATTCACAAATCATACAATATACTACTGTTAGCAAATTCATCCACAA
CATTGCTGGAGAA   ATCTTT  TCCCG TTT G  CAATCC                                                                                                                                                                                                                                                             
|||||||||||||   ||||||  ||||| ||| |  ||||||                                                                                                                                                                                                                                                             A
GTGATGACCTTTT   TAGAAA  GACCC GTA G  TTAGGT                                                                                                                                                                                                                                                             
             AAC      -C     A   C TT      GTAATCAGAGCCAAATTTATCCTTGGTCCTAATTTCTTATAGAAATCAGAGCCAAGTTTTTGGGATACTGTGAAAAACTAGAATCAGGGCGAATCACAATGGTCAGCCCTGATTTCTAGTAAAAATCAGGGCCAAGTTTTTTTATCGTCCACCACAATCTGGGAGGTGATAGAAATCAGGGCCAACAAATTATTGGCCCTGGTTTTAACTTTTTTTTTTAGGCCTTTCGACGGGACTCGGCGCGCGGTCGACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2640465

CATTGCTGGAGAAAGCATCTTTACTCCCGATTTGCAATCCCTTTAGTCCCGGGTTGCAAACCGGGAACTCGAATCTGGGAGTCCCTATTAAAATAATTGGGACTAAAAATCCATCTTTTGTCCCGGTTGATGTTAACAATCGGGACTAAAGATGGTAGCGTCACGTGGCTCTGCTACATCTTAGTCCAATTTTTGTTTTTTTATTGTTTTTTGCTGCTTGCATTCCCCACGTCAAGTTGCTCCACTAATTCACAAATCATACAATATACTACTGTTAGCAAATTCATCCACAAAGCAGCTGGCGCGCGGCTCAGGGCAGCTTTCCGGATTTTTTTTTTCAATTTTGGTCCCGGTTATTAAACAACCGGGACTAAAGATAGTGGAGGGTCTAACACCACCTGCTATTTTTTTGAACCGGGACTAAAAATGATCTTTAGTCCCGACTGGTAACACTAAGCGGGACTAAGATCAAAAAGTGTCATAGGGTTTTTGAACCGAGACTAAAGATATTCTTTAATCCTGGTTCCTATTTAAACCGAGACTAATGTGGATTTTGCATGACCCAGCAAAGATCAATTTTCCAGTAGTG

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