SE2640466

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7434
  • Oryza sativa
  • SE2640466
  • CACTA
  • Ca6
  • Chr04:35105373-35105956
  • CAC
  • CACTACTAGAAAAAGTATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                        AGGTGGCCAAAAGTAATTTTTCCAGACGTGGGGGACAACCACCTACAGTAGTCGGGGTAACAGCCCGCCTGTGAAAATCCAATAAATGCACACAAAAAAAAATCGCGGGACACGCCTCGCCGCCGCCCCCGTCGGCCTCCCCCCTCCCTCCTCCGACCAGATCTGCGAGGGAGGGGGGAGGGGAGCCGCCGCTGCCCCGCACCGTCGTCGCTCCCCCTTCGGCGGGGAGGGAGGGGGACGGGCTGAGGTTGAGTGTTGAGGGAGAGAG
CACTACTAGAAAAAGTATTTTTGC                                                                                                                                                                                                                                                                            
||||||||||||||||||||||||                                                                                                                                                                                                                                                                             
GTGATGATCTTTTTCGTAAAAAAA                                                                                                                                                                                                                                                                            
                        AGGCTGCACCCCCAGAAAAAAAGCGTCCGCCTGTACTGGGAACCTCGGTTTGCTGGCGGATGTTTTTATATTTAGTCCCACTTCAAACGACGCCTGGTGAATTTGCCGCAGATGTTTTTACTAAAAGTGTCCGTCTGGTGAATTCGCTGCGTTGCGTGGAATACACCAGGTGGACGTTTTCGGTATGGATGGGTTTTTCTTTTAAAATTAGAAGGGAATAGAAGAGGAGGGTGGGGAGGGGTGGTGAGTAAAGGAAAGTTGAGAGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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