SE2630467

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7435
  • Oryza sativa
  • SE2630467
  • hAT
  • Hat23
  • Chr01:26805837-26806490
  • CAGGATGG
  • CAGGATGGGAATGGGTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                     A - GATCGAGTCTAAACCGTTTTAAATAAAATAAGTTTATTGTACTATGGTTTAATACGGTCAATCCATTATAAGTTCATTAGATCAATAGATTATCTATGAATATATAAATAGATCATCTACGCTCCTAATAGATAAAAAAAGAAGCTCTTATTGCATGCTTGTAAAACTTGGGCCTGAAATTTTTAGACTCACATTCACATTATAAAAACATATCAAATTTAGTTGAATTTTATAGAGATGATTTATTATATGGAGAAGCAACTTTGTTCAAATTTTAAGTCATTTAGACATACGGGGCCCACG
CAGGATGGGAATGGGTAGGAC T G                                                                                                                                                                                                                                                                                                               
||||||||||||||||||||| | |                                                                                                                                                                                                                                                                                                                
GTCCTACCCTTACCCATCTCA G T                                                                                                                                                                                                                                                                                                               
                     - C AGGTAAATAGGTAATTTAGATAAGCATTTAAACAGGATTGCCTAAAATTCCAGCCAGGTTTTTTATATTTACCTAGTTTACCGAGTTTCGTAATCTTGGATTCCAAATTCTCCAAGCTGGGTTTTATTGAAGTGTACATATTTATAAAATTTTTAAACATGTTTCAACGAAGAGATATATTATTTAGTAAGGATATTTTAAGTTGATTTAAATTGTTCAAAAATATCACACTTGCACTCAAATTTTTAAAACACAAGCTCAAAATGTGCGTACATTGATCTTAAAAATTTAGAATCATTACGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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