Plant MITE

SE2630468

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7436
Oryza sativa
SE2630468
hAT
Hat26
Chr10:20578680-20579252
TAGGGATG
TAGGGATGAAACTGGTTCGGATAGCTT

Secondary structure and sequence

TSD TIR

5'

3'

           C   T     --TA    --CC    GTCCGGACCATTTTTCGGATTCGGATAGTTTCGGTCGGAATTATCCGGAAATTCTCGGATTCGGAAACGAATTCGGATATTTTTTCTCGGAAACGAAAACGAATACAGTAAGGGTACTATCCGTCGGAATCGGAAAACGGTCGGAAACTATCCGGATTTTTTTTTTTGGATATCCGCATACATTGAGAAAATTTTAGAAAAAATACGTATATATACATAACTTTTTCATACGGAATCAGATGAAGACAAAC
TAGGGATGAAA TGG TCGGA    GCTT    GTCC                                                                                                                                                                                                                                                           
||||||||||| ||| |||||    ||||    ||||                                                                                                                                                                                                                                                           T
ATCCCTACTTT GCC AGCTT    CGAA    TATA                                                                                                                                                                                                                                                           
           T   T     TTAA    ATAG    AGCAAAAGTATAAAAAAAGTCTTAACCTTAGCCTTAGCTTTTGAGCCTATGCCTTTACTTTAGCTTATAATAGCTTATGTCTATGCCTCGCTTATGCTCTGCTTTGCTTATGCCATCGTTTATAAATGGCCATATATTTTTGGGGGAGTTTAACTCAAAGAATTAGTTCTTTCTCTATAGCGAATAATAAAAATTATTTCATCAGTTATTATTTCAACATCTAGAGTAGCTCGAGATGTTATAACTATATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630468

TAGGGATGAAACTGGTTCGGATAGCTTCCGTCCGTCCGGACCATTTTTCGGATTCGGATAGTTTCGGTCGGAATTATCCGGAAATTCTCGGATTCGGAAACGAATTCGGATATTTTTTCTCGGAAACGAAAACGAATACAGTAAGGGTACTATCCGTCGGAATCGGAAAACGGTCGGAAACTATCCGGATTTTTTTTTTTGGATATCCGCATACATTGAGAAAATTTTAGAAAAAATACGTATATATACATAACTTTTTCATACGGAATCAGATGAAGACAAACTTTATATCAATATTGTAGAGCTCGATGAGATCTACAACTTTATTATTGACTACTTTATTAAAAATAATAAGCGATATCTCTTTCTTGATTAAGAAACTCAATTTGAGGGGGTTTTTATATACCGGTAAATATTTGCTACCGTATTCGTTTCGTCTCGTATTCGCTCCGTATCTGTATTCGATAATATTCGATTTCATTTCCGTATCCGAGTTTTCGATTCCGATTCCAATTCTGAAAAAAATATGAAAACGAATATGATAAAGCAATTTTCGATCCGTTTTCATCCCTA

Copy Cancel