SE2630469

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7437
  • Oryza sativa
  • SE2630469
  • hAT
  • Hat36
  • Chr08:15127812-15128512
  • TAGGGATG
  • TAGGGATGAAAACGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
     A          TTGAAAAAC  T  A   TTTTCGTTTTCATATTTTTTTCCTCGAAAATGGAATTGGAACGGTATACCCAGAAACGGTAACGATATTGGTAATATCGGTATATCGGAAACAGAACCATCGAAACGGAATATACTGGTATTGATCTGGAAGTCTAAAATTCATGTCCGGAATCAGCGGAGTGTGGTATAGCACATTTAATTATGCACGTAGATGATTTTTAACTTTATTCTTGCATCATCACATTACACATAACACTATTATATGATGATTAATGTTATGGTAATAAGTTTGACAAACAATATAAACAAAGTTCAACAATACTTCAACATCGATAGGTTG
TAGGG TGAAAACGGT         CC AT CCA                                                                                                                                                                                                                                                                                                                                 
||||| ||||||||||         || || |||                                                                                                                                                                                                                                                                                                                                 A
ATCCC ACTTTTGCCA         GT CT TTA                                                                                                                                                                                                                                                                                                                                 
     C          --------T  -  -   AAAGTTCTAAAGGCTGACGGCAAAGGTCAAAAGTGGCTGGCAAAGTCAGCCATAGCCGTTGGCTGACACCATCTTTATCTTTGCCATTATAGAAGACCTTTACCCTATCTCCAAAAAGGTTGACAAAATAGCCATTGGTATAAACATGCCATTAAAGGCAGTTTTAAGGCTTTTCTAACGTTTTCAAGGGATCGCCGAGTTAGTCGAGTTAGGTAGCCTTCGGGTATTTATTTTCTTCGTACCATCCGTACATCGGGTATTTCTTCCCCTTCACTAATCCCTTTTATAACAATTGGGATACTATACCGTACACCTAAAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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