SE2630470

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7438
  • Oryza sativa
  • SE2630470
  • hAT
  • Hat61
  • Chr01:28593738-28594383
  • TAGGGGTG
  • TAGGGGTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
           --AGAAAAA      ACCGAAATGACTGA             ---   C  CACTTTCTACTAACCGAATTTAGTTTGGTCAATTCGGTTTTGGGGCTCGGTTAATCGAATTGAAAAAAACCGAAATATAACACTGGCCCATTAGGCCCAATACCTCCTCAGCAAAAGCAAAACCTTATCCACTCCACGACCTTATCTAACCCACTACCACCATCATCCTCCTCTCCATCCACCGGGCCCTTCCCATCCCTATCCCCTCCTCCCCCGTGCTGGTGATGCCGATCGCGATGGTGAAGCTCCCGGATGGCCTCCCGCAGCCGC
TAGGGGTGGGC         GACCGA              GACCGAAAAATTC   GGT AG                                                                                                                                                                                                                                                                              
|||||||||||         ||||||              |||||||||||||   ||| ||                                                                                                                                                                                                                                                                               
ATCCCCACCCG         CTGGCT              TTAAGCCAGAGCC   AGC CA                                                                                                                                                                                                                                                                              
           CAAGCCAAC      ------------GT             AGA   -  AAAAGCCAATCAAACCAGAAACCTTTGAGTCCTGGTTGTTTAAGCAAGAGCCAGAGCCAGTCTGGCTTAAAAAAGTGTCGGCAACCTCTCATCTCTGCCTCCGCTGTGGTTCCGTCTCCGCCGCGCTACTAGCTACCCACGGGCGCTGTTGTCGCGTTACCTCCGTCTCCGTGACGGCCACGACCTCCGCCTCCTGCCTCCGTCTCCACCACGGCCGTGACCTCCGCCTCCGCCGCGTGTCCCGCCGCCGCTGGATGCCTTCCGCTTCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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