SE2630471

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7439
  • Oryza sativa
  • SE2630471
  • hAT
  • Hat67
  • Chr07:25925713-25926466
  • TAGGGGTG
  • TAGGGGTGGATAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
     G     ----   -----------G   - GGCTCGGCTCGGATAACGAGCCGGCTAACGAGCAGCTCGACTCGACTCGTTTGAAAGCTCGAGCCAGCTCGTTAGGCTCGCGAGCCAGAACTAGTATGCTACAGAGAAGTAGAGAACGCAGCAGCAACATGAAATGGCTCCAAAATTATCTGAGAAATTATCAAAAGATATAAGAAAAAGTCTACAATCTCCCATCAAGAAACTCTAACACAACAACACCGAAATCTTTCACCACGAAAAGCAAAATCAGAAAAGCCTCCTACTGTGACAGAGAAGTAGAGAGCAGAAAGCATCCTTTCGTTTCTTCATGCTCCATCATCCATGGTCATGACTGACAAGGATGCATGGCC
TAGGG TGGAT    AGC            AGC C                                                                                                                                                                                                                                                                                                                                                              
||||| |||||    |||            ||| |                                                                                                                                                                                                                                                                                                                                                               
ATCCC ACCTG    TCG            TCG G                                                                                                                                                                                                                                                                                                                                                              
     G     CTTT   AACACTGAACAA   A CGAACCGAGTACTGCTCGAGCCGAGCTGAACTGAGTTGAGCCGAGTAATGCCAAAACTTTGCTCGGCTCGATGTCAAAGTCGAGCAATCCGTATTGCTCGGTCGAGCGAGCGCTCGAATTGCTCGAATGTGTATCTCTATTCTATTTAGTCATCCTGTGGATACCGGGTATTTGTTTCGGGGTACTGTCGGGTTCATGTAATCAGTGGGCACGTACGCAGATGGCTTGTCTTATCATAGCGAAGGGGAAGGAGAGTAGATAGAGGTTTGAGGTTAGGTCTAGCTCAGCGGCAGCCGGTGAGGCTCGACGGCGTGGTCGCGACGAGGGACAGAGGTAGGACACAACGGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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