SE2630472

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7440
  • Oryza sativa
  • SE2630472
  • hAT
  • Hat67
  • Chr03:10159973-10160440
  • TAGGGGTG
  • TAGGGGTGGATAAAAAGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
             AA    TGAAA   GT      GA C       ----AGCA       --       C      AAGTCGTAGTCTTAATTAGTTGAGTCGAGCTAACCTTTTAGGTCGTGAGCTACTCGTTTAGCTCGTTAGTATAAAATATCACCATATCTTCACGAACTTAAGGAGTTTCTTGACTAGTGCTTAGTCTTTTAATTATATCAAAATTATTCATATTCAGTGAGTA
TAGGGGTGGATAA  AGCT     CTC  GGCTTG  T GGCTCGT        AGCTCGG  CTCAGAT GATTCG                                                                                                                                                                   
|||||||||||||  ||||     |||  ||||||  | |||||||        |||||||  ||||||| ||||||                                                                                                                                                                    
ATCCCCACCTATT  TCGG     GAG  CCGAGC  A TCGAGCA        GCTCGGT  AGTCGAG TCGAGC                                                                                                                                                                   
             GC    ---TC   --      AA C       ACAGAATT       CG       -      AATTACAATTGCTCGATTTTTCGATTGAACCGAGCCGAGCGCTCTACCGAACAATTCGAGCAATCCGAGCAATTGCTCGATATAGAGTAATTATAGTATAATTATTTAAGTTTAAATTGTAAAATAATACATAATTGTATTATTATTTGTGATTGATTATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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