Plant MITE

SE2630473

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7441
Oryza sativa
SE2630473
hAT
Hat72
Chr01:9053280-9053851
TAGAGATG
TAGAGATGGCA

Secondary structure and sequence

TSD TIR

5'

3'

           --    A   T CACCGTCTGGGGTTACATCCGCGTCACCGTTCCCATGGTGATGAAATTTCACCGTCCCTGTCCCCGCCAACTATGACGGTGCTACATTTTATCCATCCTTGACCTTGCACGGTCCGTCACCGCATGTGCTCATCTTGCTTCGTCACCGTCGGAGCTAATGGGAGAGGTCAAAGCCATGGCCAGTAGCCGGCAAGGGAGAGAAACGGTGGGGTGGCGGCGGAGATGGGTTGCAATAGGTCCCTAGCTACAGGACACGCGGGTCACC
TAGAGATGGCA  ACGG GAA T                                                                                                                                                                                                                                                                         
|||||||||||  |||| ||| |                                                                                                                                                                                                                                                                          
ATCTCTACCGT  CCCC TGC T                                                                                                                                                                                                                                                                         
           TA    -   - AGTAGCTAAGGGGTGCCACTTTAGTGTGTAATTCCGGAATAAGCCAAACCTCCCCTAACTCCCCCTTATTAAGGTGTGGTATTATCCACACTTTATTTAGGGGAGGTTAGGGAGAGATTTCCCCTAATTGGTTTGTTCCGGATTCCCTACTCCTACCTACTATAGACGGTAGGTGTCCTTTAGATCACCACGTTTTGAGTAGTGGTAGCCCCTACCGTCCCCGCCCCCGCCCCTGTCACGAGGTGAGGGGCAGGAGCAGGGGGCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630473

TAGAGATGGCAACGGAGAATTCACCGTCTGGGGTTACATCCGCGTCACCGTTCCCATGGTGATGAAATTTCACCGTCCCTGTCCCCGCCAACTATGACGGTGCTACATTTTATCCATCCTTGACCTTGCACGGTCCGTCACCGCATGTGCTCATCTTGCTTCGTCACCGTCGGAGCTAATGGGAGAGGTCAAAGCCATGGCCAGTAGCCGGCAAGGGAGAGAAACGGTGGGGTGGCGGCGGAGATGGGTTGCAATAGGTCCCTAGCTACAGGACACGCGGGTCACCGCGGGGGACGAGGACGGGGAGTGGAGCACTGTCCCCGCCCCCGCCCCTGCCATCCCCGATGGTGATGAGTTTTGCACCACTAGATTTCCTGTGGATGGCAGATATCATCCATCCTCATCCCTTAGGCCTTGTTTGGTTAATCCCCTTTAGAGAGGGATTGGAGGGGATTTATTTCACACCTATTATGGTGTGGAATTATTCCCCCTCAATCCCCTCCAAACCGAATAAGGCCTTAATGTGTGATTTCACCGTGGGGAATCGATGATCGTCCCCATTGCCATCTCTA

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