Plant MITE

SE2630474

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7442
Oryza sativa
SE2630474
hAT
Hat78
Chr04:11281183-11281950
CTACGATA
CTACGATACACGGATACGG

Secondary structure and sequence

TSD TIR

5'

3'

   C A   A         CCATCTTAG      A   -- TGTCGGACACGCGAATGGACACGGATACGTGTCTGACACGCCCGGATACGTGTCAAGTACGTATCAGGCATTTCCATGACTTTCAGATAAATAAATTAATTCTGGATATGTCTTCGATACGATCTTGACACTTGCCCGATACGTTCGAACCCTCAAACCGCGTGGGGCCGTGTGGGGTATCGACCCAGCCCATCTGGTTTGTCGCCTCCATCTGTTCCCGACGCGCCTCACGCGAGTCACGAGCTCCAGCGCTGTCATCATTGGCTCACGGCCAGGTAGCTTTGAATTGTCTGATGGTGCAGCAACATGAAAACTTGCACTTTTTTTTTGGTAAAAACTTGCACTTA
CTA G TAC CGGATACGG         TCGCGT TTT  G                                                                                                                                                                                                                                                                                                                                                           
||| | ||| |||||||||         |||||| |||  |                                                                                                                                                                                                                                                                                                                                                            
GAT C ATG GTCTATGCC         TGCCTG TGC  A                                                                                                                                                                                                                                                                                                                                                           
   A A   G         -----CCTA      -   AT TGCGCTATGCCGCTGTGCCCCTATGCCGTAAAAGATTTTTTACTCCTATGCCCCTATGCAATTATATATACTTTTTATTTCTTATGTCTTTTAATTATTTGACTTTTTATCATAACTATATCGACTAACCACTAAGATTACATCGCTTAGAAGAGATTAAGAGACCATTCATTTCAAAAACCTCACCAATCTGAATATAACGAAGATCGACAGTTATTATAAATTCTTCTTTATTCGCATATATTGATTTTCTGATCATTTAACTATGTAGTACGAACATTAACATCTAAACATCATCGTAGTTGGTGATTTCAATGTTTGTTGTCTCCCTTTTGTATCTAATATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630474

CTACGATACACGGATACGGCCATCTTAGTCGCGTATTTGTGTCGGACACGCGAATGGACACGGATACGTGTCTGACACGCCCGGATACGTGTCAAGTACGTATCAGGCATTTCCATGACTTTCAGATAAATAAATTAATTCTGGATATGTCTTCGATACGATCTTGACACTTGCCCGATACGTTCGAACCCTCAAACCGCGTGGGGCCGTGTGGGGTATCGACCCAGCCCATCTGGTTTGTCGCCTCCATCTGTTCCCGACGCGCCTCACGCGAGTCACGAGCTCCAGCGCTGTCATCATTGGCTCACGGCCAGGTAGCTTTGAATTGTCTGATGGTGCAGCAACATGAAAACTTGCACTTTTTTTTTGGTAAAAACTTGCACTTATTTATAATCTATGTTTTCCCTCTGTTGTTTGTAACTTTAGTGGTTGATGCTACTACAAATCTACAATTACAAGCATGATGTATCAATTTACTAGTCTTTTAGTTATATACGCTTATTTCTTCTTAAATATTATTGACAGCTAGAAGCAATATAAGTCTAACCACTCCAAAAACTTTACTTACCAGAGAATTAGAGAAGATTCGCTACATTAGAATCACCAATCAGCTATATCAATACTATTTTTCAGTTTATTAATTTTCTGTATTCTTTATTTTTCATATATATTAACGTATCCCCGTATCCTCATTTTTTAGAAAATGCCGTATCCCCGTGTCGCCGTATCGCGTATACGTGTCCGTATCCCCGTATCTGGGTAACATAG

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