SE2620475

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7443
  • Oryza sativa
  • SE2620475
  • Mutator
  • M4
  • Chr07:17956649-17957174
  • CTGGATTTT
  • CTGGATTTTTCACATTTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
            CA      TCCTTTTAG             C     AACC                            G         C   AAT               ATC     AGCCCTCCGATGAAAGTTAAGTCACAAATGTGAAGGGGGGCGGTGCCCAACGTCATTGGCACCGAGGACCAAATTGTAATTTTTTTTTAAAAAGGACCTATTTGTAAATAAAATATTTACAAATAGGTCTGTGCCAATGACACTCATCGAG
CTGGATTTTTCA  TTTTGA         AAAACTTATCCTA AAATA    CCTAAAAAAACTTATTTTAGAAATGATC TTTTCGCGG GTC   GACATGACGGCGCCA   CCCCT                                                                                                                                                       
||||||||||||  ||||||         ||||||||||||| |||||    |||||||||||||||||||||||||||| ||||||||| |||   |||||||||||||||   |||||                                                                                                                                                        
GACCTAAAAAGT  AAAACT         TTTTGAATAGGAT TTTAT    GGATTTTTTTGAATAAGATCTTTACTAG AAAAGTGCC CAG   TTGTACTGCCGCGGT   TACTG                                                                                                                                                       
            CG      ---------             A     -CTA                            G         -   --G               ---     CAACCTCGGTAGGGGAGGCGGGAACCCACTTTCGATTCAGTGATTACACTTCCTCCTACCGCGATTGGTTAAACATTTTTTTAAATTTTTTCTTGGATAAACATTATTTTTTTCCCCTGGGTAAACATTTATTTTTATAATGTTTATCCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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