SE2620476

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7444
  • Oryza sativa
  • SE2620476
  • Mutator
  • M10
  • Chr07:3247351-3248066
  • GAGTGAAAT
  • GAGTGAAATACATTACTTGTCCCTAAACTTGTGTGGTGATGTCACTTAGGTCCGTGAACTTGAAAATTATACGTTTAGGTCCGTGAACTTAGTTTAATGTACCACTCCAGTTCAAACGTCCTTTGACTGCGTTTGACCGCC

Secondary structure and sequence

TSD    TIR
5'



3'
          C  TA  T    C          T    A                                             G     A         A       -A   C  A                         AAC    CATACCACATAGGCAACACTTTTGCTCTCAGCCCCTTCCACATCACAACACGTCACATATATCTCCTTGTAGCTATATAGTGACACCAGAATCCCCCAAAAAAAATCCTCAAATCGTTATTCCCTCTCATTCTTCTCCTTGCATGTATAGAAAATGTGGTCTCGATTAGCAATTGCTATTGTGCTGCCTCCCGCCGCTAATCCGGCCGCAC
GAGTGAAATA AT  CT GTCC TAAACTTGTG GGTG TGTCACTTAGGTCCGTGAACTTGAAAATTATACGTTTAGGTCCGT AACTT GTTTAATGT CCACTCC  GTT AA CGTCCTTTGACTGCGTTTGACCGCC   GTGG                                                                                                                                                                                                                   
|||||||||| ||  || |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||| || |||||||||||||||||||||||||   ||||                                                                                                                                                                                                                    
CTCACTTTAT TA  GG CAGG ATTTGAACAC CCAT ACAGTGAATCCAGGCACTTGAACTTTTAATGTGCAAATCCAGGTA TTGAA CAAATTACA GGTGGGG  CAG TT GCAGGAAACTGGTGCAAATTGGCGG   CCGT                                                                                                                                                                                                                   
          A  TG  C    A          C    C                                             A     C         C       GC   A  A                         ---    TGTGAAAGCACGAATCGGGGGAGGTGTATATAGAAGCGTGTATTGAATGGGACTGATCACGTAAAGTTGGTTTAGGGGGTTTTATAGGGATTTAGCCGATCCCAAAGCTGCCATTCCAATCGCCTTCCTCCGCTCTCCATCGCCAACACCGCCGGAACCGCCACTCTAATCGCCGTCCTCCGTCACGCCACGTCGCCCCAATCGCCACTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End