SE2620477

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7445
  • Oryza sativa
  • SE2620477
  • Mutator
  • M17
  • Chr03:10426201-10426725
  • GGAAAACGT
  • GGAAAACGTACACCGAAGGTCTCTCAACTTGTCATCGAGTTACAAAATCATCCTTGAGCTGCAAAACCGGATATGACGC

Secondary structure and sequence

TSD    TIR
5'



3' 
      C                                          A  C                          AC     CG  G   --    TTTTTCATTGGGTAGTCCTACTTCACAAATCATAAATTTATATTACATACCAAAAATTTTCGAACACCATAAATCCCATATACATGTTGATAAATGTGCACTGGAAACCACACATGCTAATTTTATCACTATGATTTTAGATAGAAACAGAAACAACCTATACCAA
GGAAAA GTACACCGAAGGTCTCTCAACTTGTCATCGAGTTACAAAATC TC TTGAGCTGCAAAACCGGATATGACGC  AGTAG  TA CCA  TGAA                                                                                                                                                                      
|||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||  |||||  || |||  ||||                                                                                                                                                                       
CCTTTT CATGTGGCTTCCAGGGAGTTGAACGGTAGCTCAATGTTTTAG AG AACTTGGCGTTTTGGCCTATACTGCG  TAGGG  AG TTG  TGTT                                                                                                                                                                      
      T                                          C  A                          --     --  -   AA    TTGGTCACGTTTGATCCAGGGAGTCGCCAAAACTGAGACCGAAACAGGATACACCGTCCCCTGAGCCGCACCCTGGGTGCACCCGGGGTACGCAGCCGGAAAACTACTAGTACAAAGAAAAACTCTTTTTTTACTATTAGTACAACTTAAAATAAAAAAATCCCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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