SE2620478

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7446
  • Oryza sativa
  • SE2620478
  • Mutator
  • M18
  • Chr08:4422628-4423376
  • GAGAAATTG
  • GAGAAATTGGCGATTTTACCACCACAAAATAATAGTTTCGTTGGAATACCATTGCTTTAAAGTGATTCACTACAATATCATCTTAAATTAAGTGGTGTTCACCAA

Secondary structure and sequence

TSD    TIR
5'



3'
                     C A          -             A                       A         C                       AATAC       ATTCT                      A           A        --            CTA  TA      C      -        A    G                       A        C     AATCTC  A         CCACCGACATAGATAGCCATTTTAACATCATATTAATTAAATCTAGGCATAAAATTGGATCGCATGTAGGCGAGCATCATATTAATTAAATTTGAACAGCACGTAGACTTAA
GAGAAATTGGCGATTTTACCA C CAAAATAATA GTTTCGTTGGAAT CCATTGCTTTAAAGTGATTCACT CAATATCAT TTAAATTAAGTGGTGTTCACCAA     CATTTTT     TTTTGTTAATAGAAATATTTTT CTCTATTTTAC CTTTTCTC  ACCAAAATACCC   CC  TATCTT TCCTTT CTCCCATG CTAG ATATTGCAACCGTCCCAAATCTC CATATAGG ACAAT      GC TATTTTGTC                                                                                                                
||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||     |||||||     |||||||||||||||||||||| ||||||||||| ||||||||  ||||||||||||   ||  |||||| |||||| |||||||| |||| ||||||||||||||||||||||| |||||||| |||||      || |||||||||                                                                                                                A
CTCTTTAACCGCTAAAATGGT G GTTTTGTTAT CAAAGCGATCTTA GGTAGCGAAGTTTCACTAAGTGA GTTATGGTA GATTTAATTCACCACAAGTGGTT     GTAAAAA     AAAACAATTATCTTTATAAAAA GAGATAAAATG GAAAAGAG  TGGTTTTATGGG   GG  ATAGAA AGGAAA GAGGGTAC GGTC TATAACGTTGGTAGGGTTTAGAG GTATATCC TGTTG      AT CCGTATTTT                                                                                                                
                     A C          A             C                       C         A                       -----       -----                      C           A        CC            TAC  TG      A      A        G    G                       C        A     ---GAT  -         AATCTAGCGTATATCTGCTTAGTACAATTAATTTAAACTTGTCATGTATCTGTATTTTAACCTATCGTATATGTAAAAAAATTTTAAGTTAATGTATAGATACGATAGGTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End