SE2620479

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7447
  • Oryza sativa
  • SE2620479
  • Mutator
  • M19
  • Chr03:204889-205473
  • GGAATAAGT
  • GGAATAAGTCCACT

Secondary structure and sequence

TSD    TIR
5'



3' 
              TGCTTTA    TCAAGTTTAATTTTGACATATCTAAACCGTAATACCATAAATCTTTAACCCCCCACATCTAGCCAAAACCGTTCAACTAAGGTTCCATGCCAGACTGTCAGTAGGGAGGGCTGGTTTTGTTGACGTGGCAACCTAGTTAGCAAAAGAAAATTTAAAAAAACATGAGGCCCACATGTAAGTAGACTTCACCTAAAAACGGTTGTCTGTCTATGGAACGCGAACGCTGGAACGCCGGCATGACACCATCAGTGACGAGACATGCAGGCCCATC
GGAATAAGTCCACT       TACA                                                                                                                                                                                                                                                                               
||||||||||||||       ||||                                                                                                                                                                                                                                                                                
CCTTATTCAGGTGA       TCTG                                                                                                                                                                                                                                                                               
              -------    TAGGAAGCAGAAATGTAGCAATAAATTAACTGTGGGTGGATTTGATATTATGGTCTTTAGAAGTGGGGAGTAGAACGGTATTGGCAAGTTGAGTCCAAGCTAATGTCATACTCCCAACCAAAACGGCTATACCGTAGAATCAGTCGTTTTTGTTTTTAAAATTTTTTTGTATCCTGGGTATACATTCGTCTTAAGTGGAGAGGGTGTACTACCGCTTCTACCTCATCTTCTACTCCCGGGATGCACTCGCGCGTCCAACGCACGGGAAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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