Plant MITE

SE2620480

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7448
Oryza sativa
SE2620480
Mutator
M31
Chr05:15550189-15550864
GGGGCAATT
GGGGCAATTGTGTTTCTGCCCTTGCTTTACATGTCAATTGTGATTTTACCCCTACTTTTTAAGGTTTGTGATTTTGCCCCTGCTTTTTTGAAACGAAGCAGCCGTCTGCCCCTGGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

                                                   CTA       A                 C                         C  C     G    GA  G   TTTGGTGGGCCCGGGATTTCCAAATTAAACGAAGAAAGAAAATGCTATTATAATTTGTGAATGACTATTCTACCCTTGCTTCAATGAAACAACCAAATCCCCAAACCTTGTTGTCCCCGATCCAATCGAAAACCCTAGCTTGCTAGGTTGCAAGCAGCGGCGGCGGTGGCTTACGCGACAAGCGGCGGCGCGCAGCAGGGAGGAGCGGCGGC
GGGGCAATTGTGTTTCTGCCCTTGCTTTACATGTCAATTGTGATTTTACCC   CTTTTTA GGTTTGTGATTTTGCCC TGCTTTTTTGAAACGAAGCAGCCGT TG CCCTG TTTG  CG TAG                                                                                                                                                                                                                    
|||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||  || |||                                                                                                                                                                                                                    T
CCCCGTTAACACAAAGACGGGGACGAAATGTACAGTTAACACTAAAATGGG   GAAAAAT TCAAACACTAAAACGGG ATGAAAAAACTTTGCTTCGTCGGCG AC GGGAT AGAC  TT GAT                                                                                                                                                                                                                    
                                                   -AC       C                 -                         T  A     G    AA  -   TACCATTGTCAGAATTTACACACCACTTACCTGTTTATATGGGGACCTGTACAAAACCGAACACGTTGTGGTGCTCCGGCGCGGCTGCCTCGGCGGCGAGGAAAGACGGTGAGGAGGCGGCTCCCCGGCGGCACGGTTGCCTCGGCGGCGAGGAGCCCCGGCGGCGCGGCGCGGCGCGGACGGGTGCGGGCTGAGGTGGCGCACGACCGGGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620480

GGGGCAATTGTGTTTCTGCCCTTGCTTTACATGTCAATTGTGATTTTACCCCTACTTTTTAAGGTTTGTGATTTTGCCCCTGCTTTTTTGAAACGAAGCAGCCGTCTGCCCCTGGTTTGGACGGTAGTTTGGTGGGCCCGGGATTTCCAAATTAAACGAAGAAAGAAAATGCTATTATAATTTGTGAATGACTATTCTACCCTTGCTTCAATGAAACAACCAAATCCCCAAACCTTGTTGTCCCCGATCCAATCGAAAACCCTAGCTTGCTAGGTTGCAAGCAGCGGCGGCGGTGGCTTACGCGACAAGCGGCGGCGCGCAGCAGGGAGGAGCGGCGGCTCGGGCCAGCACGCGGTGGAGTCGGGCGTGGGCAGGCGCGGCGCGGCGCGGCGGCCCCGAGGAGCGGCGGCTCCGTTGGCACGGCGGCCCCTCGGCGGAGGAGTGGCAGAAAGGAGCGGCGGCTCCGTCGGCGCGGCCTCGTGGTGTTGCACAAGCCAAAACATGTCCAGGGGTATATTTGTCCATTCACCACACATTTAAGACTGTTACCATTAGTTAACAGAGTAGGGACATGCGGCTGCTTCGTTTCAAAAAAGTAGGGCAAAATCACAAACTCTAAAAAGCAGGGTAAAATCACAATTGACATGTAAAGCAGGGGCAGAAACACAATTGCCCC

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