SE2620482

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7450
  • Oryza sativa
  • SE2620482
  • Mutator
  • M41
  • Chr03:3886767-3887520
  • GCAATGTAT
  • GCAATGTATCAGGTGCACACAGCTCATTAGGTGCACACATGCACTCGTGCAACGGCATCCCTCCGATCTCAATCCAAAGGGT

Secondary structure and sequence

TSD    TIR
5'



3'
                                                                                G ATAA    ----   G   C             T      ACC      A    CA    CAC    C        ----    A   --A      CCA   --------  GAACAGATCGATGGAGATCGTCCTTCTGCGGCGGCACGAAGCTTCGACTCCTCGGATTCCCTTCCCCATGCATTCCTTCTCCACCGATTCTATCTTGTCTCAAGCGAAAACAGAGATTTTGGAGGTGTAGGTGCTTGATTTCTGGTTGTTGACGCCTCCACCGCTGCCGATGCTTCCGCAGCCATGCAGCCGCTG
GCAATGTATCAGGTGCACACAGCTCATTAGGTGCACACATGCACTCGTGCAACGGCATCCCTCCGATCTCAATCCAAAGG T    AGCA    GGT GAG AATTTTGCAAAAA ACGCCC   GCTTGC TGTA  TTTG   AAGA TCCTTGAC    CTTT GTT   TCCATC   CGA        TC                                                                                                                                                                                                   
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||||    ||| ||| ||||||||||||| ||||||   |||||| ||||  ||||   |||| ||||||||    |||| |||   ||||||   |||        ||                                                                                                                                                                                                   C
CGTTACATAGTCCACGTGTGTCGGGTAATCCACGTGTGTACGTGAGCACGTTGCCGTAGGGAGGCTAGAGTTAGGTTTCC A    TCGT    CCA TTC TTAAAACGTTTTT TGCGGG   CGGATG GCAT  AAAC   TTTT AGGGACTG    GAAA CAG   AGGTAG   GCA        GA                                                                                                                                                                                                   
                                                                                G ----    AGGA   A   C             T      ---      -    TC    ATT    T        CTCC    A   AAG      -AA   TACATTTA  AGTAGAGACAGTTCGTTACTTCGTTGACTTGCCCCTTCGGGTCTAGACTTTGTCCGTTCTTGTTTTTGTTTCTTAGTTCGTCGTCCACCGCATGTACAAGAGAGCTTTTAGTTTAGACATTAAAGAGAGTACTAGAGTAGAGGGTTCGACCGGAACATCCACCGGCTGCCATCGGTGTAGCCGTTACCGTCGCCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End