SE2620483

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7451
  • Oryza sativa
  • SE2620483
  • Mutator
  • M67
  • Chr05:29592044-29592638
  • GGATTAATT
  • TTTGATACATG

Secondary structure and sequence

TSD    TIR
5'



3' 
GGATTAA     TA    CAATTACAATTTTACAA     AATATAATTCATAAAATCTTCTACGTGTCACTGAAATCTTGTGAAATTCAAATCATACTATATATTGCAGTCTTGTGTCCAAACCTCTATCTCTGTTTAAGGACATGCTATTTCTTCCTCCTTGGTCTTCTTCTTCCTATGGAAAGATATTTTGAAGCCTCCCTGCTCCTTTCCCTTCCCTAGCTAGCTCAGGTCGCTCATTCTGCCGTCGCCGCCAAGGCCTAGCTCGGCTGCCCGTTAATCATCACCGCCTCGGCTTTCCCCTA
       TTTGA  CATG                 ATATC                                                                                                                                                                                                                                                                          
       |||||  ||||                 |||||                                                                                                                                                                                                                                                                           
       AAACT  GTAT                 TGATT                                                                                                                                                                                                                                                                          
 CCATTC     AG    ----------------A     ACATTAAAATCGCATAAATTTTTTTATATATAGTAATGATGAGCACTTTGGACAACGTACAGTGACTTTAAAACATTTTAAATTGGCACGATAACAGCGGGTATTGAGGTAGTTTTAACGTGCCAGAAAGGTATAAGATAGGAAAGAGAGAGAAAGGAGGCCGCAAAGAAAGGGTCGAGGCTGTGTTCATCGTCCGTCGCCACCACTGCTACAGGTGACGGGGATACGGTGACTCGGAAAGGATCCCAACACCTCATGATCTATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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