SE2620484

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7452
  • Oryza sativa
  • SE2620484
  • Mutator
  • M72
  • Chr11:4322536-4323067
  • GGCAAATTT
  • GGCAAATTTTGCTACAGGACACCGTAATTGTGTGGTTTTAGCCTAGGGACACCGCAAAAACAAAGTTTGAGGAAAGACACTACGTAACCGTGGATATTTGCGATGGACACCGCACCGTCTAAACGAA

Secondary structure and sequence

TSD    TIR
5'



3'
                     C                                C        A    GA      -                         -            A    C   -A    ACT       CTGACGTGGCGGTCGGGAGCCCCTTTTTTGACGCGGTCGGACCGAAATGCCCCTGCACCTTACCTCCTCATATTGCTTGCTGGACACTAAATTGTTTGCTGGACACTAAATACATAGATAGATACAT
GGCAAATTTTGCTACAGGACA CGTAATTGTGTGGTTTTAGCCTAGGGACACCG AAAAACAA GTTT  GGAAAG ACACTACGTAACCGTGGATATTTGC GATGGACACCGC CCGT TAA  CGAA   TGCTATG                                                                                                                               
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||  |||||| ||||||||||||||||||||||||| |||||||||||| |||| |||  ||||   |||||||                                                                                                                               C
CCGTTTAAAACGATGTCCTGT GTGTTAACACACCAAAATCGGGTCCCTGTGGC TTTTTGTT CAAA  CCTTTT TGTGATGTATTGGTACTTATAAACG CTACCTGTGGCG GGCA ATT  GTTT   CCGGCCT                                                                                                                               
                     A                                A        A    AC      G                         G            C    A   AA    CAA       GTCACTACGTTACGGCGTATATGGAGAGTGCGGTCCGCGTTGTTGGTATACTGCCGCCACCTCGAGCGGCCGTCGCCACCGATCTTCCTTGCATCAGGTACAGCCATATAGACAGTACATATACATG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End