SE2620485

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7453
  • Oryza sativa
  • SE2620485
  • Mutator
  • M74
  • Chr11:7732055-7732608
  • GGGAAAAGT
  • GGGAAAAGTCCAATTTTAACCCTCTAACTTTTATGCTTATCTAAAATACACCACCGAATTACAAAACCGGATATAATACACCCTC

Secondary structure and sequence

TSD    TIR
5'



3'
            A   TA              A                   A  -      CA                      ----CAACT      C             ATA  C                T   A   C     -T    ACTA        C              TATATA             C     CTT              ---      C    AA  GGCGGCAACTAACACAAAGGGAGGGGGGAAGGAAGAAAGAGAGG
GGGAAAAGTCCA TTT  ACCCTCTAACTTTT TGCTTATCTAAAATACACC CC GAATTA  AAACCGGATATAATACACCCTC         AAACCG ACACTTTAATCCC   AG TGTTTTTATGGTGGTT TGG ACA GTGGA  GCCA    TATAAATG TCCACGTCAGCGGT      TATGGGCCAAAGC AGATG   TTTCTCCCTTCGGT   GTTTGC TTGC  GC                                            
|||||||||||| |||  |||||||||||||| ||||||||||||||||||| || ||||||  ||||||||||||||||||||||         |||||| |||||||||||||   || |||||||||||||||| ||| ||| |||||  ||||    |||||||| ||||||||||||||      ||||||||||||| |||||   ||||||||||||||   |||||| ||||  ||                                             
CCCTTTTCAGGT AAA  TGGGAGATTGAAAA ACGAATAGATTTTATGTGG GG CTTAAT  TTTGGCTTATATTATGTGGGAG         TTTGGC TGTGAAATTGGGG   TC ACAAAAATACCACCAA ACC TGT CACCT  TGGT    ATATTTAC AGGTGCAGTCGCCA      ATATCCGGTTTCG TCTAC   AAAGAGGGAAGCCG   CAAACG GACG  CC                                            
            A   TG              C                   -  A      AC                      ATTTATAAT      C             AAC  A                C   A   A     TC    -AAC        T              ------             C     ---              CCC      T    --  AGCTCCCCCTCCTCCTCCTGACCGGGTAGAAGAAGGAAGGAGAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End