SE2620486

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7454
  • Oryza sativa
  • SE2620486
  • Mutator
  • M75
  • Chr02:29492262-29493056
  • GGGTTAATT
  • GGGTTAATTAGATACATACCATTAAAAATTTATCAGTTTTGAAATATACCATCAGTATTCGTGTATTTGGAACTATGCCATTACAATTT

Secondary structure and sequence

TSD    TIR
5'



3'
                 A                A                 C G    C             T        ACA    TACACAT   CA  ATA        CCT  -   TTACGAAAAAAT      C   TTA     ---                 CC     -----------         ACA  - CAGAGA -- AG  G -- G  GGA  GAGCGGCAGCAGCGGCAGCGTCGGAGCGAGCGGCGAGCGGCAGCGGCGGCAGCAACGGCAGCAGCGGCAGCGGCGGTAGCAGCGAGCGGCGAGCAGCAGCGATGGAGCGAGCGGCAGTGGCGGAGCGGGCGGCAGCAGCGGAGCGGCGGCGGCAGCGGCGGAGCGGCGGCGGCAGCGTGCG
GGGTTAATTAGATACAT CCATTAAAAATTTATC GTTTTGAAATATACCAT A TATT GTGTATTTGGAAC ATGCCATT   ATTT       ATT  AG   TGCCACTA   AC CGT            TTGGAC AAA   CCCTT   TTTTGCTTCTTTTTCTC  CTCTC           CTTTCTTCC   GC T      A  C  GC G  C GC   GC                                                                                                                                                                                     
||||||||||||||||| |||||||||||||||| ||||||||||||||||| | |||| ||||||||||||| ||||||||   ||||       |||  ||   ||||||||   || |||            |||||| |||   |||||   |||||||||||||||||  |||||           |||||||||   || |      |  |  || |  | ||   ||                                                                                                                                                                                     G
CCCAATTAATCTATGTA GGTAATTTTTAAGTGG CAAAACTTTATATGGTA T ATAA CGCATAAACCTTG TACGGTAA   TAAA       TAA  TC   ACGGTGAT   TG GCA            AACCTG TTT   GGGAG   AAGATGGAGAGAGGGAG  GAGAG           GAGAGAGGG   CG C      G  G  TT G  G CC   GC                                                                                                                                                                                     
                 C                C                 A G    A             C        CTA    CAAACAT   AG  ATC        -TC  T   TAAAACGTACAT      T   TAC     TAG                 AA     TAGAAGTTCGA         --G  A ------ AA --  - AG -  ---  GGCAGTGGCGGCGACGACGACGGCGACGGCGCGGCAACGACGAGCTGCGGCGACGACGAGCGGCGAGCACGACGACGAGCGACGGCGAGGCGCACGACGACGGCGGCGTGGCGGCGACGGCGAGTGGCTACGGCAGCGAGGTGGCGGCGACGGCGACGACGGCAACAATGAGCGGCGGCGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End