SE2620487

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7455
  • Oryza sativa
  • SE2620487
  • Mutator
  • M77
  • Chr01:28988131-28988821
  • GAGAAAATT
  • GAGAAAATTCGATCTGAAAAAAGGGTAAAAAAATTAGCACACAAAAATTTCCTCTTAAGTTAAAAGCACAGGTCACCGATTTTCCTTTGATAAGTAGCATTTCCGTCTCATTTTGAGTAAATGACGTTAGATT

Secondary structure and sequence

TSD    TIR
5'



3'
             - --T        --------          -T       CA  AA     T   AA        -        --  CG    TC    G   A          C  CT                         TTATCC        A          C   C  ATTAAA           --CTT     -  CA   AG  AA  -   AAA   GCGGTTCGGCACGGGAGCAGGCATGGTGGTGTGGGTGGTGCAGGCGCATTGCGGACTCATGGCGGTGACGCGTGATAGTGGCTACGGCTCGGGAGACCGACAAGTAGGCTTGGCAAGGCGGCGGTCGGCG
GAGAAAATTCGAT C   GAAAAAAG        GGTAAAAAAA  TAGCACA  AA  TTTCC CTT  GTTAAAAG CACAGGTC  AC  ATTT  CTTT ATA GTAGCATTTC GT  CATTTTGAGTAAATGACGTTAGATT      GAGTAGAG AATTTATCCT AGG TA      TTTGCTCTTTG     TCATC GT  CTG  CC  GT GCC   GAG                                                                                                                                  
||||||||||||| |   ||||||||        ||||||||||  |||||||  ||  ||||| |||  |||||||| ||||||||  ||  ||||  |||| ||| |||||||||| ||  |||||||||||||||||||||||||      |||||||| |||||||||| ||| ||      |||||||||||     ||||| ||  |||  ||  || |||   |||                                                                                                                                  T
CTCTTTTAAGTTA G   CTTTTTTT        CCATTTTTTT  ATCGTGT  TT  AAAGG GAA  TAGTTTTT GTGTCCAG  TG  TAAA  GAAG TAT TATTGTGAAG CA  GTAAAACTTGTTTGCTGCAATCTGA      TTCATCTC TTAGATAGGA TCT AT      AAACGGGAAGC     GAGCC CT  CGG  TG  CG CGG   TCG                                                                                                                                  
             A TAT        TTGTTGGG          CT       TC  CA     -   GG        T        CA  TA    TA    A   A          A  AT                         -----C        A          A   T  -----A           AAAAG     A  --   -A  AG  A   ---   GAGGACATGGGCAAATCGGTGACGGCGCGCCGCCGCGGACTTAGGTGCTGCGCGGGCACGGACGAGCTAGAGCACGACTTGACGTGTCGACGAACTACGAGCGAGGACACGGACGCGGCGACGCGCCGGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End