SE2620488

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7456
  • Oryza sativa
  • SE2620488
  • Mutator
  • M78
  • Chr06:19914810-19915439
  • GGCAAATTT
  • GGCAAATTTTGCTACAGGACACTCTTTATGTGTGGTTTTAGCCCTAAAACACTGTCCAAACTCACTTTTGGAGGAAAACACTCCATAAACGTGGTAATTTACTACTGGACACTGCGCCGATTAAAATAATAATTTCCGGTTGAA

Secondary structure and sequence

TSD    TIR
5'



3'
   C                                      C C  AA                       A           C                A   C                              C        AAAA           A      ATA                A                  A                     T   -     CCCAA    CGAATCATGC  C    G  GACGATGATGGTGACGAGTCCGAGGAGGAGGAGGATGCGCGCAGCTCCTCCCCCGCC
 GG AAATTTTGCTACAGGACACTCTTTATGTGTGGTTTTAG C TA  ACACTGTCCAAACTCACTTTTGG GGAAAACACTC ATAAACGTGGTAATTT CTA TGGACACTGCGCCGATTAAAATAATAATTT CGGTTGAA    AGAGAGAAATC CGTGAA   TCAAAAATGCCCTTGG CCCACATGTCAGCTTTAT TCCTATCTTTCTTCTCCTCTT CTT CTCAT     TCGC          CG CGCC AT                                                         
 || |||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||    ||||||||||| ||||||   |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||     ||||          || |||| ||                                                          
 CC TTTAAAATGATGTCCTGTGAGGAATACACACCAAAATC G AT  TGTGACGGGTTTGAGTGAAAACC CCTTTTGTGAG TATTTGCACCATTAAA GGT ACCTGTGGCGCGGTTAATTTTATTATTAAA GCCAACTT    TCTCTCTTTAG GCACTT   AGTTTTTATGGGAACC GGGTGTACGGTCGAGATA AGGATAGAGAGAAGAGGAGAA GAA GGGTG     AGCG          GG TGGC CG                                                         
C  -                                      A A  CC                       C           A                C   C                              A        CTCC           C      -AC                C                  G                     -   C     --TAC    -------AGA  -    -  GCGGCCGGCACGGGCACGTCCCCCTCCTCGACGCGTGCTCACCGTCCGCCGCCGTCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End