SE2620489

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7457
  • Oryza sativa
  • SE2620489
  • Mutator
  • M80
  • Chr01:3307595-3308374
  • GGGAAAAGT
  • GGGAAAAGTCCAAATTACCCCCCT

Secondary structure and sequence

TSD    TIR
5'



3'
           A      C     GAACTATTGAGT     C            -    C         G    CA           C        A     AAA   C   -    GCACTATT      C       -A    -------AA     A     GCATCAACGTGACAATCCAGTCAGTAAAAAAATAGAAAAAAAATCCTTGGACCCACATGTCATCTCTCTCCCTCCCCTGCCCTCTCTCTCTCCACAGCACCCAACATCACTTGTTACAAAAACCACTTCACTCCTCCATTAATCAGAAGCAGAAGACAACGACGAAGGATCGTGCGTTGCAGGCATCGGGAGAGGGAGAGGAAGGCAAGGTGGACGGGGATGTGCCTCGCATATATGT
GGGAAAAGTCC AATTAC CCCCT            GAGTA GAATTATCCTCT GGAC CGAAAATCA ACAT  TTCACCCTTGA TATTAATA CAGAC   GAT ACC CTGA        TTGGAG GGTTTTG  CCTA         ATTGT CATGT                                                                                                                                                                                                                                              
||||||||||| |||||| |||||            ||||| |||||||||||| |||| ||||||||| ||||  ||||||||||| |||||||| |||||   ||| ||| ||||        |||||| |||||||  ||||         ||||| |||||                                                                                                                                                                                                                                              G
CCCTTTTCAGG TTAATG GGGGA            TTCAT CTTAATGGGGGA TCTG GCTTTTGGT TGTA  AAGTGGGAGTT ATAATTAT GTCTG   TTA TGG GATT        GGCCTC CCAAAAC  GGAT         GGTCA GTCGT                                                                                                                                                                                                                                              
           C      T     ------------     A            G    A         A    CA           A        A     --C   A   T    --GAGCTT      A       CA    GTACCGTCA     -     TAAGAAGAAAAAATTTACCTACCCGGGGTGGACAGTCAGAGTAGGAGACATAAAGAAAGGGGAGTGGAGAGATAGAGGGAGAAAGGGGTTAGGAGAGAGAACAGGGAGGGGAGTGGAGGCAGAGAGAGTCGACCGCCTACCCCTCGGTTCGTGCCATCGCCGCCCGCCCCCACCCCTGTCTCCGTTTTCACCCCGTGCTGCGCTCGCACTCGTTGTGATCGGTACGCTGCCACACTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End