SE2620490

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7458
  • Oryza sativa
  • SE2620490
  • Mutator
  • M80
  • Chr08:12302109-12302518
  • GGAAACAAA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
           AACAAATCCAAATTATCCCTCAAACTATTGTGGCGGTAGGAATTACCCCCATCAATTAAAAAATTAGACATTTTTCGCCCTCAACTTTTCATATCGGTCGAATTACCCCCTGACGATTCCGGAGCGGTTTTGGTCCTACATGGTGCACACGTGACCAGTGAACATAAAAAAGTTAAAAATAATAGGCCCACTTATTCG
        GGA                                                                                                                                                                                                      
        |||                                                                                                                                                                                                       
        AAT                                                                                                                                                                                                      
CCTTTTTC   GGGGGGATGTGATAAGACCTTCATGCTTAATGGGCGAGTTAATTTTTTGGTTTATAAGAAGTGGGAGTTAAAAAGTATGCCCTGTCTAAATGGGACTATCTAAAACCTCGCCAAAACAAAGATACACTGTCAGGTCAATCATATTTTTTAATATTTTTTATATCCTGGGTGTATACCATTGGTTCTCTTCTCCGGCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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