Plant MITE

SE2620491

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7459
Oryza sativa
SE2620491
Mutator
M82
Chr03:23845478-23846258
GGTTTTTCC
GGTTTTTCCCTGTGTGCTATTAAGAAAGATGGTG

Secondary structure and sequence

TSD TIR

5'

3'

             -  G            -----        TCTACCTCC      ---CT        CA      C        C         C       A          CTACTCTCTCTTCTCCCTCGATTCCCCTCTCTC   AACATCCGCGTCTGCCTCACTCCTGGCCAGCGCCTAGCTGAGCGTGGCCGAGCCGCTGGACGCCTGCACCGCCATGCTGGCCTCCCCTTCCCTCGTTGCCGCCGTCTCCGCCGTCTCTGCCGAGCCAAGCGGACAGCGCTGCTGGCCACCCCTCCAACCGGCGTTCGACCTCCTCCTTTGCCCGGCGCTGCTTTGGCTCGTGCACCCCGACGGCTTCCGTCGCCGCCGTGCCGGCCTTCCCCTATCCTCCTCGATGCCG
  GGTTTTTCCCT GT TGCTATTAAGAA     AGATGGTG         GTGCCA     AAAAAGTT  AGCCTC TTCTCTAT ATCGTTGAA TTTATCG GCCCTCCACA                                 CGC                                                                                                                                                                                                                                                                   
  ||||||||||| || ||||||||||||     ||||||||         ||||||     ||||||||  |||||| |||||||| ||||||||| ||||||| ||||||||||                                 |||                                                                                                                                                                                                                                                                    
  CCAAAAAGGGA CA ACGGTAATTCTT     TCTACCAC         CACGGT     TTTTTCAA  TCGGAG GAGAGATG TAGTAGTTT AAATAGT CGGGAGGTGT                                 GCA                                                                                                                                                                                                                                                                   
CT           A  A            TCCCG        --TCTACCA      AATTT        -C      A        A         A       G          ---------------------------AATAAA   GGTAAAAATCAGCATTGCCACCCATTGCCGCGTCGGTTTATTGAATCAACGGGAATCCGAACTCTCCTGTAAATTACTTCAAACAAAGGAACACACGGTAAGCCTCCCGTTGGTAAGCCCCCGCCGGGTCACGTCGCCGCTCCGATCCCCGCCGCCGCGTCGGTCGCTGGCCCAGCTCCGCTACCGCCGCGCCACGGGGCCGACCCACCGCCGGTCCGCGGCTAGCCGGGACGCGCCGACGCCGTACTTCCACCGGGAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620491

GGTTTTTCCCTGTGTGCTATTAAGAAAGATGGTGTCTACCTCCGTGCCACTAAAAAGTTCAAGCCTCCTTCTCTATCATCGTTGAACTTTATCGAGCCCTCCACACTACTCTCTCTTCTCCCTCGATTCCCCTCTCTCCGCAACATCCGCGTCTGCCTCACTCCTGGCCAGCGCCTAGCTGAGCGTGGCCGAGCCGCTGGACGCCTGCACCGCCATGCTGGCCTCCCCTTCCCTCGTTGCCGCCGTCTCCGCCGTCTCTGCCGAGCCAAGCGGACAGCGCTGCTGGCCACCCCTCCAACCGGCGTTCGACCTCCTCCTTTGCCCGGCGCTGCTTTGGCTCGTGCACCCCGACGGCTTCCGTCGCCGCCGTGCCGGCCTTCCCCTATCCTCCTCGATGCCGCAGGGCCACCTTCATGCCGCAGCCGCGCAGGGCCGATCGGCGCCTGGCCGCCACCCAGCCGGGGCACCGCGCCGCCATCGCCTCGACCCGGTCGCTGGCTGCGCCGCCGCCCCTAGCCTCGCCGCTGCACTGGGCCGCCCCCGAATGGTTGCCCTCCGAATGGCACACAAGGAAACAAACTTCATTAAATGTCCTCTCAAGCCTAAGGGCAACTAAGTTATTTGGCTGCGCCGTTACCCACCGTTACGACTAAAAATGGACGAAATAATGTGGAGGGCGTGATAAAATTTGATGATAGTAGAGAGAGAGGCTCAACTTTTTTTTAATGGCACACCATCTCACCATCTGCCCTTTCTTAATGGCAAACAAGGGAAAAACCTC

Copy Cancel