SE2620492

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7460
  • Oryza sativa
  • SE2620492
  • Mutator
  • M88
  • Chr01:39300129-39300522
  • GGAACCAGT
  • GGAACCAGTCCCACTTTAACTCCCTTAAAAAGTGACCTGAATTTAATCCGTGACCCTCAACCGCACAACCGGTATGACCCCCCGA

Secondary structure and sequence

TSD    TIR
5'



3'
    CC   CC      A        AA       C           C          A      C      ----T     C   C  ACTATTCAAACCAGT         ATTCCT               A       --   GACATGGCACTGACGTGGCGATGTTGACTTGGTCTGTGGTGTTGACGTCACGCTTAGGAGGCAT
GGAA  AGT  CACTTT ACTCCCTT  AAAGTGA CTGAATTTAAT CGTGACCCTC ACCGCA AACCGG     ATGAC CCC GA               GCAATTTGA      TAGCGGTTTTGGACG CGGTTTT  GCT                                                                
||||  |||  |||||| ||||||||  ||||||| ||||||||||| |||||||||| |||||| ||||||     ||||| ||| ||               |||||||||      ||||||||||||||| |||||||  |||                                                                T
CCTT  TCA  GTGAAA TGAGGGAA  TTTCACT GGCTTAGATTA GTACTGGGAG TGGCGT TTGGTC     TACTG GGG CT               TGTTAAACT      GTCGCCAAAACCTGC GCCAAAA  ACT                                                                
    AT   -A      C        -A       A           C          C      T      TATCC     A   A  ---------------         ------               C       TA   GCACCACTACAACTGGATCATAAAAAAAACTTACTGCTTACCCCGGGTGTATCAAAAAATAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End