SE2620493

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7461
  • Oryza sativa
  • SE2620493
  • Mutator
  • M88
  • Chr09:19481745-19482461
  • GGAATAAGT
  • GGAATAAGTTCACTTTGACTCCCTTAATAGTGGTCCAATCTAATTCGTACCCCTGAATTACAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
               T      C    -        C     A       C C            TTGACTCCCAACTATTAAA     TACAA           CAACGGTCTTAAAGGGAGGTTTTACTGACTTGGCACCTATGTGACGGTGTTCCCTTAATAGTGGTCCAATCTAATTCGTACCCCTGAATTACAATTTGACTCCCAACTATTAAAACCGGTACAATTTGACTCCCTCAACGGTCTTAAAGGGAGGTTTCGCTGACTTGGCACCTATGTGACGGTGTTGACCTGGTCTTCGTTCCACGTGACGGTGATGTGACGCTTATGTGGCATTAGACTTAAGAAAATATATATGTGGGATCC
GGAATAAGTTCACTT GACTCC TTAA TAGTGGTC AATCT ATTCGTA C CTGAATTACAAT                   ACCGG     CTTGACTCCCT                                                                                                                                                                                                                                                                        
||||||||||||||| |||||| |||| |||||||| ||||| ||||||| | ||||||||||||                   |||||     |||||||||||                                                                                                                                                                                                                                                                         
CCTTGTTCAAGTGAA CTGAGG AATT ATCACCAG TTAGA TAAGTAT G GACTTGGTGTTA                   TGGCC     GAGTTGGGGAA                                                                                                                                                                                                                                                                        
               T      A    C        C     C       A A            -------------------     -TATA           TTAATAGTTTTGGCTACGTTAAACTGAGGGAGCCACCAAAACCTCCCGCCAAAGCGACTACACCGCCACAACTGAACCAGAAGTAGGATGCACCGCAAATACACCGTGATGTTAATTTTTTTATATATACCGCCACAACTGAACCAAAACCAGAATACCGTATCTCTCTTCGATCTCTCCCTCCTCCTCCTTCCTTTCCTCTCTCCTACTGGACACCGGGGGATACAATCATCCAGGGTATTAAAAAAAAATAGTGATTGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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