SE2620494

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7462
  • Oryza sativa
  • SE2620494
  • Mutator
  • M98
  • Chr09:10965363-10966081
  • GGGGCAATT
  • GGGGCAATTGCATCTATACCCCCACTTTGAATCCCAACTGCTGTTTTACC

Secondary structure and sequence

TSD    TIR
5'



3'
               ATA   C      G  T     C GC        - CCCCT               C     C                   T       G       -         A   A     AC    TTAGTTCTAGAGCGGCGGAGGTCTTCACAGTGGTGCACCATCAATGGAGGTGTTCACCAGCATGGACGAGGGGGGCACCGACGGCGGTGCTGTCGACGGAGGTGTGCAGTCGCTGTCGTCGGATGGGAGTAGCCACCACGGGGGAAGCACCGCGGCTACAGCCTGGCTACCGCCGCGACGGAACACTAGCCCACACCCGCCGCCGCCGTGTGCGCCCTCGCCG
GGGGCAATTGCATCT   CCC CACTTT AA CCCAA T  TGTTTTAC C     TTTTAGGGTTTGCAA TTTAC CTCACTTTTTGAAATTGAA CCAGCAG CTACCCC ACTTCTAAC CCT GTTTG  GGTG                                                                                                                                                                                                                               
|||||||||||||||   ||| |||||| || ||||| |  |||||||| |     ||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||||||| ||||||||| ||| |||||  ||||                                                                                                                                                                                                                               C
CCCCGTTAACGTAGA   GGG GTGAAA TT GGGTT A  ACAAAATG G     AAAATCCCAAACGTT AAATG GAGTGAAAAGCTTTAACTT GGTCGTC GATGGGG TGAAGATTG GGG CAAAT  CACC                                                                                                                                                                                                                               
               GAC   A      G  T     A AA        A AATGT               A     C                   -       A       G         C   -     --    CAGGGTGCAAAAAAAACAATTTCTTATGTTTAACTTTATTTTTTTACAAAATACATTATATTTAAATGGTAACATGGCGACTCACTTACCTATCCCTGACTTTAGGGAGGGGAGGTGTGGGGTACGCACACTTGGGCTTTGGATTGGATAGCCGCCGCCGCCGCCGACGAGCCCGCACGTACTCCGCGCCGTCGTCGTCGTGCCCACTCGCACGCCGCGTCGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End