SE2620495

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7463
  • Oryza sativa
  • SE2620495
  • Mutator
  • M111
  • Chr12:24813029-24813565
  • GAGACCTTT
  • GAGACCTTTTACGGTGTTTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
    C      C         ----------------------     -  TTAGAGGTACTTGGAGGTGGAATAATCTGCACCGTTGATCAAGAGAAGGGCAAGGTAGGGAATAAAATTATTGTAACATGATAGCAGTTGAGTAATTAACTAGTAAAACATGAGTTTTTTTATGTGAATTGAATACTTCCAACCATTGATCAGGCATAGTCGAGCGTTTGAACAAGAGACAATATTTGATTGATCTTAGTGCCGGTAAACGACTTAACTCGAAAACAAC
GAGA CTTTTA GGTGTTTGC                      GAGGT AT                                                                                                                                                                                                                                     
|||| |||||| |||||||||                      ||||| ||                                                                                                                                                                                                                                      
CTCT GAAAAT CCACAAACG                      TACCA GA                                                                                                                                                                                                                                     
    T      A         TAAGTTTTTCCCATTTCTAGAT     A  ATTAGTGTCCATGGTGCAATTTCCATAAATTCATAATTATATCCATGAATCCATGATTCCCATTTTTATATTAAAACGATCATCTCACTTTTACCATCTTAACAGGGGGTTTAAAATTATCCATGGCGTTTCCATGCTGGCACGCGTAATTGTAGATGTAACATAGTCGCAATATACACACAAAAATAAACACGGTAAAAGAGAAAACGCACCAAAAAACATCTAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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