Plant MITE

SE2620496

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7464
Oryza sativa
SE2620496
Mutator
M113
Chr09:13307975-13308693
GGGGCATTT
GGGGCATTTGCTTATTTGACCCTGTTTGGAGGTCTAACTACCAAATTGACCTTACTTTTTCTACTTTGAATTTTTGACCCTATTTTTCAAAACCGAACCTACCATCTGACCCTGTTCC

Secondary structure and sequence

TSD TIR

5'

3'

                                         C  A                       AA         CTA                CTA  A            -  ---    AGGTGGGTTAACAGTGTTAAGTTCGGAGCAAATAGTCTATTTTGCCCTTGCTTATTTGACCCTGATATATCTTGCTTATTTGACTTTATTATGCCACAACGTGTACATATTCTGATCTGTTGACAATTTTTGTAATAAGTTTGACAGATTTTGCTTTAATTTAATAAATTTGATTAAATTTGACAGATTTTTGACAAATTGAATTGAACAAGTCAATTTGACAAATTTGACAGAT
GGGGCATTTGCTTATTTGACCCTGTTTGGAGGTCTAACTAC AA TTGACCTTACTTTTTCTACTTTG  TTTTTGACC   TTTTTCAAAACCGAAC   CC TCTGACCCTGTT CC   GTTA                                                                                                                                                                                                                                           
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  |||||||||   ||||||||||||||||   || |||||||||||| ||   ||||                                                                                                                                                                                                                                           T
CCCTGTAAACGAATAAACTGGGATAAACCTCCAGATTGATG TT AACTGGGATGAAAAAGATGAAAC  AAAAACTGG   GAAAAGTTTTGGCTTG   GG AGACTGGGACAA GG   AGTG                                                                                                                                                                                                                                           
                                         A  A                       AC         AAC                TAC  C            A  AGA    GCAATACTAAAGTTAATTTATTTATTTATTTATGTTAATAAAAAGCATTACTGGTCTTATGGGAGCTCCTTTGGTATAGATCTGGAATGGGATAGGTCTTGTCAGCGCTGAGAGAGACACAAATACGAAGTAACTTACGTTAAACCCTAGGTGTTTTATCCTAATATACGACAACTTTAAAACATGTTTTTAGATACTATTAACACAGTTTAAAACAAGTTAAATAAAACAGTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620496

GGGGCATTTGCTTATTTGACCCTGTTTGGAGGTCTAACTACCAAATTGACCTTACTTTTTCTACTTTGAATTTTTGACCCTATTTTTCAAAACCGAACCTACCATCTGACCCTGTTCCGTTAAGGTGGGTTAACAGTGTTAAGTTCGGAGCAAATAGTCTATTTTGCCCTTGCTTATTTGACCCTGATATATCTTGCTTATTTGACTTTATTATGCCACAACGTGTACATATTCTGATCTGTTGACAATTTTTGTAATAAGTTTGACAGATTTTGCTTTAATTTAATAAATTTGATTAAATTTGACAGATTTTTGACAAATTGAATTGAACAAGTCAATTTGACAAATTTGACAGATTGTTGACAAAATAAATTGAACAAAATTTGACACAATTATCATAGATTTTTGTACAAAATTTCAACAGCATATAATCCTATTTTGTGGATCCCAAATTGCATTCAATGAAGCATAAACACAGAGAGAGTCGCGACTGTTCTGGATAGGGTAAGGTCTAGATATGGTTTCCTCGAGGGTATTCTGGTCATTACGAAAAATAATTGTATTTATTTATTTATTTAATTGAAATCATAACGGTGAAGAGGAAACAGGGTCAGACGGCATGTTCGGTTTTGAAAAGCAAGGTCAAAAACACAAAGTAGAAAAAGTAGGGTCAAATTAGTAGTTAGACCTCCAAATAGGGTCAAATAAGCAAATGTCCC

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