SE2620497

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7465
  • Oryza sativa
  • SE2620497
  • Mutator
  • M114
  • Chr01:38475318-38476095
  • GAGGACTTT
  • GAGGACTTTTACAGTACATTCTACCACAAGTATATACTAGCAGTATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
            A           CA A           G        GAAAAGGTA    -    ATTTGTTAAAACTATGAAAAGGGCTGTTTAGTAATTTGAAATTGAGATTTATTTCTTGCGATTTAATTCAATCGGGAGTTCTTCGATCTCGTCGTCCGGGCGTTGTAGCGCTCCCATCGCGCGTGGCGACGGCGCGAGTGGAGGCGTAGCGATTCCTTCGACGGTCGGATTTAATCTAGTAGATTGAGTTTGCAATGGGCATGATTTGCGTAAGAACACTAGGGAAAAAACTGGTCAGGGATAAAACCACATGATAGTGTAAATAGATTTGATCTGTTCACAGCAATGAAGTGGATTATCTCATACATTTCTTGGTTCGATCAGTTT
GAGGACTTTTAC GTACATTCTAC  C AGTATATACTA CAGTATGT         GATT TGGT                                                                                                                                                                                                                                                                                                                                       
|||||||||||| |||||||||||  | ||||||||||| ||||||||         |||| ||||                                                                                                                                                                                                                                                                                                                                        
CTCCTGAAAATG CATGTAAGATG  G TCATATATGAT GTCATATA         CTAG TTAC                                                                                                                                                                                                                                                                                                                                       
            C           AC A           G        -------AA    A    CACATTTAAGTAGACTAGAAGGAGGGTTTATAGGACGTCATATTTAACAAATCCCATATAAACAGAAAAATAGATAAATACACACACACACACACCCCCCCCCCCCCAAATTAAAAAATTTAAGTGCAAAGGAGTGAACCAGTCTAGGCTAGCTATCGGCGGATGGGTCAGCTTCGGGAAAAAAAAAGAGCTACGACGCGCGTACCCGCTAGCAGCGGCGATTAAAGAAGACGTTCGACGGCTGCTGGTGTTAGCCGCGGCAGCAAGAAAGAATTAATTCAAGTTACTTAATTCCTGAACCATACACAATCCCTAAGTCTGTGAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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