Plant MITE

SE3320004

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7469
citrus sinensis
SE3320004
Mutator
M2
chr7:28306290-28306509
TTTTTATAT
GAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGACGTGGTAT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTATAT                                                    C       TAATTT        A  GA      AAATTAATAAAA   AA
         GAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGA GTGGTAT      ATTGGTTG AT  AAATAT            ACA  
         |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      |||||||| ||  ||||||            |||  T
         CTCATTACTATGTCGGTGTTTGAGAACATGTTTGAATAAAACATGTTTGACT CACCGTA      TAACCAAC TA  TTTATA            TGT  
TATATTTTT                                                    A       CTATTC        G  -A      --GTGAACCGGG   AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320004

TTTTTATATGAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGACGTGGTATTAATTTATTGGTTGAATGAAAATATAAATTAATAAAAACAAATCATGTGGGCCAAGTGATATTTAATGCAACCAATCTTATCATGCCACATCAGTTTGTACAAAATAAGTTTGTACAAGAGTTTGTGGCTGTATCATTACTCTTTTTATAT

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