Plant MITE

SE3320006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7471
citrus sinensis
SE3320006
Mutator
M5
chrUn:17091677-17091844
CAAATAGTA
TAGG

Secondary structure and sequence

TSD TIR

5'

3'

      CAAATAG    ATAAAA                                     CAA         TC       TT A    GA
             TAGG      TTGTGGTGCAACTGTGGTACCGTGCCACAGTTGCACC   TCGTTGGAT  CCACTTA  T AGTG  
             ||||      |||||||||||||||||||||||||||||||||||||   |||||||||  |||||||  | ||||  T
             GTCC      GATGTCACGTTGACACTATGGCACGGTGTCAACGTGG   GGCAACCTA  GGTGAGT  A TCAC  
ATGATAAACCCCA    ------                                     -TC         --       TT C    TC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320006

CAAATAGTAGGATAAAATTGTGGTGCAACTGTGGTACCGTGCCACAGTTGCACCCAATCGTTGGATTCCCACTTATTTAAGTGGATCTCACTCATTTGAGTGGATCCAACGGCTGGTGCAACTGTGGCACGGTATCACAGTTGCACTGTAGCCTGACCCCAAATAGTA

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