Plant MITE

SE3320030

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7495
citrus sinensis
SE3320030
Mutator
M13
chr4:16419425-16419565
ATAAAATGA
GG

Secondary structure and sequence

TSD TIR

5'

3'

ATAAAATGA  ATCCCT                  C      AC                 T   A  CCC
         GG      CTAAGTTACATGCATGTA CTTACA  CCTCTCACATGAATAGT AGT GA   
         ||      |||||||||||||||||| ||||||  ||||||||||||||||| ||| ||    
         CC      GATTCAATGTATGTACAT GAATGT  GGAGAGTGTACTTATCA TTA CT   
AGTAAAATA  GATTAC                  A      GA                 C   -  ACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320030

ATAAAATGAGGATCCCTCTAAGTTACATGCATGTACCTTACAACCCTCTCACATGAATAGTTAGTAGACCCACATCATTCACTATTCATGTGAGAGGAGTGTAAGATACATGTATGTAACTTAGCATTAGCCATAAAATGA

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