SE3320035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7500
  • citrus sinensis
  • SE3320035
  • Mutator
  • M5
  • chr3:22231194-22231352
  • AAGATTAAG
  • GATTAAGGGATCAGGCTACGGTGCAACTGTGGTACCGTGCCACAGTTGCATCCAGCCGTTGGATGCACTTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
 AA    AA   ATC     -AC          T                      C             ACT    TTAG
   GATT  GGG   AGGCT   GGTGCAACTG GGTACCGTGCCACAGTTGCATC AGCCGTTGGATGC   TGGA    
   ||||  |||   |||||   |||||||||| |||||||||||||||||||||| |||||||||||||   ||||    T
   TTAG  CCC   TTTGG   CCACGTTGAC CCATGGCACGGTGTTAACGTAG TTGGCAACCTACG   ACCT    
GAA    AA   --C     ACA          T                      T             GTC    CAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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