SE3320036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7501
  • citrus sinensis
  • SE3320036
  • Mutator
  • M18
  • chr5:23957650-23958135
  • ATATTTAGT
  • TATTTAGTAGGGATATTATCATTTTGCTACCAAAGTTTTACTGACATATCATGTCAGTACCAAGGTTTGTCGAAAAGTACATTTTACTACCAAAGTTTTGCGCCGTTATCAATTCACTACCATTCCGTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
A    T        T                                       T              G                                                              -CAACG     AATTTGCTGATGTCATAAGGGCATCAAAGACATTTCCAGCTGTAAAAGTAAAATTGTATGTTAATTTGATAGATAAATTATCATTTTACTACCAAGTTTCT
 TATT AGTAGGGA ATTATCATTTTGCTACCAAAGTTTTACTGACATATCATG CAGTACCAAGGTTT TCGAAAAGTACATTTTACTACCAAAGTTTTGCGCCGTTATCAATTCACTACCATTCCGTTAA      TTAAA                                                                                                     
 |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||                                                                                                      
 ATGA TTATCCCT TAATAGTAAAATGATGGTTTCAAAATGACTGTATAGTAC GTCATGGTTCCAAA GGCTTTTCATGTAAAATGATGGTTTCAAAACGCGGTAATAGTTAAGTGATGGTAAGGCAATT      CAATT                                                                                                     
     T        T                                       T              A                                                              CTTTTT     ATAAATTGCCTTTAACTCAATTTTCAGCTAAAATGGGGGTTCTCAAACTATCATTTTACTATTAAGGGGATTTTTAAGCCATCATTTTACTATTAAGGGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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