Plant MITE

SE3320041

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7506
citrus sinensis
SE3320041
Mutator
M20
chr9:2808872-2809061
TTCTAATAT
GAG

Secondary structure and sequence

TSD TIR

5'

3'

TTCTAATAT   AAAAGC      -C  C       AAC         AC  A C     C                       TTCATTTACTTT
         GAG      TATTTA  CT GAATTCT   CCTGAATTT  GC C GAAAG CAAAACGCACCGTTTGGTTTGGT            
         |||      ||||||  || |||||||   |||||||||  || | ||||| |||||||||||||||||||||||             
         CTC      ATAAAT  GA CTTAAGA   GGATTTAAA  CG G CTTTC GTTTTGCGTGGCAAACCAAACCA            
TATAACTTT   ACAATA      AA  -       ACA         CA  A A     A                       TTCCCTTTCGCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320041

TTCTAATATGAGAAAAGCTATTTACCTCGAATTCTAACCCTGAATTTACGCACCGAAAGCCAAAACGCACCGTTTGGTTTGGTTTCATTTACTTTCCGCTTTCCCTTACCAAACCAAACGGTGCGTTTTGACTTTCAGAGCACAAATTTAGGACAAGAATTCAGAATAAATAATAACACTCTTTCAATAT

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