SE3330055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7520
  • citrus sinensis
  • SE3330055
  • hAT
  • Hat1
  • chr3:21233026-21233235
  • AATAATTA
  • TAATTAACAATAATGCTACACATCCCAAATTTTTTATCCCAAAAAGTTATCCCAAATGATGTGGCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
AA      -A  A                       T                 C           GC   TATCAAT          GATAA      TA    AC
  TAATTA  CA TAATGCTACACATCCCAAATTTT TATCCCAAAAAGTTATC CAAATGATGTG  ATT       TGGTTGGTGA     TATAAT  ATTC  
  ||||||  || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||  |||       ||||||||||     ||||||  ||||   
  ATTAAT  GT ATTACGATGTGTAGGGTTTAAAG ATAGGGTTTTTCAATAG GTTTACTACAC  TAA       ACCAACTATT     ATGTTA  TAGG  
 A      AA  C                       C                 A           AA   TTAACTT          AATAA      --    TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3