Plant MITE

SE3320077

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7542
citrus sinensis
SE3320077
Mutator
M2
chrUn:83852012-83852201
ATATATAAA
TATATAAAGAGTAATGATATAGTCATAAACTCTTGTACAAACTGATGTAGTGTTAATTTATTGGTTGAATTAAATATTTCTTG

Secondary structure and sequence

TSD TIR

5'

3'

 A      AA    A                  C                A                     -----------------      TT  T  GC
  TATATA  GAGT ATGATATAGTCATAAACT TTGTACAAACTGATGT GTGTTAATTTATTGGTTGAAT                 TAAATA  TC TG  
  ||||||  |||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||                 ||||||  || ||  C
  ATATAT  CTCA TACTATGTCAGTATTTGA GACATGTTTGACTACA CGTAATTAAGTAACCAACTTA                 ATTTAT  AG AC  
AA      -A    C                  T                C                     CTTTTATATTTTATTAT      TT  T  AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320077

ATATATAAAGAGTAATGATATAGTCATAAACTCTTGTACAAACTGATGTAGTGTTAATTTATTGGTTGAATTAAATATTTCTTGGCCCACATGATTTATTTATATTATTTTATATTTTCATTCAACCAATGAATTAATGCCACATCAGTTTGTACAGTAGTTTATGACTGTATCATCACTCATATATAAA

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