Plant MITE

SE3320080

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7545
citrus sinensis
SE3320080
Mutator
M32
chr8:18840375-18840809
TTTATTTTT
GGGATATTATCATTCGTATACCCTATAGATGCTCTGTTATAAAAAATACTGCAACACTTTGAGGGTGTATCAATCGTCCACCTTAAATTGACAAAAGTTATCTGCCGACCACCAAACCGTTAGCTGCTGTTTGAA

Secondary structure and sequence

TSD TIR

5'

3'

TTTATTTTT    T                                   A                                             A         GT      C  A              GC           -------AG    CGGAATTATAGCGAATTGACGATTTTACCCTTGAAAATTATCATTCGTATACCCTTAAATTCTT
         GGGA ATTATCATTCGTATACCCTATAGATGCTCTGTTAT AAAAATACTGCAACACTTTGAGGGTGTATCAATCGTCCACCTTAA TTGACAAAA  TATCTG CG CCACCAAACCGTTA  TGCTGTTTGAA         TTAA                                                                
         |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||| || ||||||||||||||  |||||||||||         ||||                                                                 
         CCCT TAATAGTAAGCATATGGGATATCTACGAGACAATA TTTTTATGATGTTGTGAAGCTCCTATATAGTTAGCAGGTGGGATT AACTGTTTT  ATAGAC GC GGTGGTTTGGCAAT  ACGACAAATTT         TGGT                                                                
TTTTTATTT    T                                   G                                             C         AC      A  A              GA           ATCCTACTG    ATTCCCATTAAACCAAAAAAGTATACTATGTTCACTATTAAATTCCCATATGTTCACTATTATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320080

TTTATTTTTGGGATATTATCATTCGTATACCCTATAGATGCTCTGTTATAAAAAATACTGCAACACTTTGAGGGTGTATCAATCGTCCACCTTAAATTGACAAAAGTTATCTGCCGACCACCAAACCGTTAGCTGCTGTTTGAAAGTTAACGGAATTATAGCGAATTGACGATTTTACCCTTGAAAATTATCATTCGTATACCCTTAAATTCTTTTATTATCACTTGTATACCCTTAAATTATCACTTGTATCATATGAAAAAACCAAATTACCCTTATGGTGTCATCCTATTTAAACAGCAAGTAACGGTTTGGTGGACGACAGATACATTTTGTCAACTTAGGGTGGACGATTGATATATCCTCGAAGTGTTGTAGTATTTTTGATAACAGAGCATCTATAGGGTATACGAATGATAATTTCCCTTTATTTTT

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