Plant MITE

SE3320081

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7546
citrus sinensis
SE3320081
Mutator
M33
chr1:16380774-16380932
ATGGGAGTG
GGA

Secondary structure and sequence

TSD TIR

5'

3'

      ATG   GTGG   AA  ATGT        T                                     CCAG     CCC
         GGA    GGG  AC    GGTGCAAC GTGGTACCGTGTCATAGTTGCATCCAGCCGTTGGATG    TGGAT   
         |||    |||  ||    |||||||| |||||||||||||||||||||||||||||||||||||    |||||   A
         CCT    TCC  TG    CCACGTTG CACCATGGCATGGTGTCAATGTAGGTCGGTAATCTAC    ACCTA   
GTGAGGGTA   --AG   GA  ----        T                                     ATGA     ACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320081

ATGGGAGTGGGGGAAACATGTGGTGCAACTGTGGTACCGTGTCATAGTTGCATCCAGCCGTTGGATGCCAGTGGATCCCACCAATCCAAGTACATCTAATGGCTGGATGTAACTGTGGTACGGTACCACTGTTGCACCGTAGCCTGATCCATGGGAGTG

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