SE3320106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7571
  • citrus sinensis
  • SE3320106
  • Mutator
  • M2
  • chrUn:27210481-27210700
  • AATATATAA
  • ATATATAAGAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGACGTGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 A      AA                                                    C       TAATTC           GA      AAA   ATAAAAATAA
  ATATAT  GAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGA GTGGCAT      ATTGGTTGAAT  AAATAT   TTA          
  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      |||||||||||  ||||||   |||          A
  TATATA  CTCATTACTATGTCGGTGTTTGAGAACATGTTTGAATAAAACATGTTTGACT CACCGTA      TAACCAACTTA  TTTATA   AAT          
AA      -A                                                    A       CTATTC           -A      GTG   CGGGTGTACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End
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