SE3320111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7576
  • citrus sinensis
  • SE3320111
  • Mutator
  • M5
  • chr4:6654496-6654653
  • TAAGTTCTG
  • AGTTCTGGGGTCCGGCTACGGTGCAACAGTGGTACCGTGCCACCGTTGCATCCAGCCGTTGGATCCACTTGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  TT  -    TCC     C        A                                      ACT     AGA
  AG  CT GGGG   GGCTA GGTGCAAC GTGGTACCGTGCCACCGTTGCATCCAGCCGTTGGATCC   TGGAT   
  ||  || ||||   ||||| |||||||| ||||||||||||||||||||||||||||||||||||||   |||||    
  TC  GA TCCT   TTGAT CCACGTTG CACCATGGCACGGTGGCAACGTGGGTCGGCAACCTAGG   ACCTA   
 G  TT  A    CTT     A        C                                      GTT     GGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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