SE3320113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7578
  • citrus sinensis
  • SE3320113
  • Mutator
  • M33
  • chr5:16632947-16633105
  • TACTGAAAC
  • GGGTCCGGCTACGGTGCAACTGTGGTACTGTGCCACAATTGCATCCAGTCGTTAGATGCACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTGAAAC   TCC    -AC               C    C    A           C  ----------     -G     GA
         GGG   GGCT   GGTGCAACTGTGGTA TGTG CACA TTGCATCCAGT GT          TAGAT  CACTT  
         |||   ||||   ||||||||||||||| |||| |||| ||||||||||| ||          |||||  |||||   
         CCC   TTGA   CCACGTTGACATCAT GCAT GTGT AATGTAGGTCG CA          ATCTA  GTGGA  
CAAAGTCAT   -TT    ACA               A    A    C           A  ACTTACAGTC     GG     TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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