Plant MITE

SE3320115

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7580
citrus sinensis
SE3320115
Mutator
M2
chr3:6996837-6997056
TTAAACTAA
TAAGAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGATGTGGCATGATAAGATTGGTTGAATTAAATATCACTTGGCCCACA

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAC                                                                                -T      CAC    --CCC   TG
      TAAGAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGATGTGGCATGATAAGATTGGTTGAAT  AAATAT   TTGG     ACA  
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||   ||||     |||  A
      ATTCTCATTACTATGTCGGTGTTTGAGAACATGTTTGAATAAAACATGTTTGACTGCACCGTACTATTCTAACCAACTTA  TTTATA   AATT     TGT  
AATCAA                                                                                CT      TTT    ATTTT   TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320115

TTAAACTAAGAGTAATGATACAGCCACAAACTCTTGTACAAACTTATTTTGTACAAACTGATGTGGCATGATAAGATTGGTTGAATTAAATATCACTTGGCCCACATGATTTGTTTTTATTAATTTATATTTTCATTCAACCAATCTTATCATGCCACGTCAGTTTGTACAAAATAAGTTTGTACAAGAGTTTGTGGCTGTATCATTACTCTTAAACTAA

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