Plant MITE

SE3320120

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7585
citrus sinensis
SE3320120
Mutator
M39
chr7:21793844-21794031
ATATATATA
TATATATAGGGTTCGGTTATGTTAGAATTTATCTACGGTGGAGTACGAATCTCAGCCACACACGCAAAGTGATAAATAATAAA

Secondary structure and sequence

TSD TIR

5'

3'

A        G    -C         A  A     C  C              CTC   CAC     C             A    TAAT    TAT
 TATATATA GGTT  GGTTATGTT GA TTTAT TA GGTGGAGTACGAAT   AGC   ACACG AAAGTGATAAATA TAAA    GAGT   
 |||||||| ||||  ||||||||| || ||||| || ||||||||||||||   |||   ||||| ||||||||||||| ||||    ||||    
 ATATATAT CCGA  CCGATACAA CT AAATA AT CCACCTCATGCTTA   TTG   TGTGC TTTTACTATTTAT ATTT    TTTA   
         A    TA         C  C     A  A              AAA   ATA     A             A    --TT    TAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3320120

ATATATATAGGGTTCGGTTATGTTAGAATTTATCTACGGTGGAGTACGAATCTCAGCCACACACGCAAAGTGATAAATAATAAATAATGAGTTATAATATTTTTTTTAATATTTATCATTTTACGTGTATAGTTAAAATTCGTACTCCACCATAAATAAACTCCAACATAGCCATAGCCATATATATA

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