SE3320123

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7588
  • citrus sinensis
  • SE3320123
  • Mutator
  • M2
  • chrUn:48796806-48797025
  • TTTTTTTTA
  • AGAGTAATGATACAGCCACAAACTCTTGTACAAATTTATTTTGTACAAACTGATGTGGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTTT                                                             AATAAG           -T      CAC    --CCC   TG
        AGAGTAATGATACAGCCACAAACTCTTGTACAAATTTATTTTGTACAAACTGATGTGGCAT      ATTGGTTGAAT  AAATAT   TTGG     ACA  
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||  ||||||   ||||     |||  A
        TCTCATTACTATGTCGGTGTTTGAGAACATGTTTGAATAAAACATGTTTGACTGCACCGTA      TAACCAACTTA  TTTATA   AATT     TGT  
ATTTTTTT                                                             ATTAAG           CT      TTT    ATTTT   TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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