SE3330125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7590
  • citrus sinensis
  • SE3330125
  • hAT
  • Hat1
  • chr5:6051909-6052118
  • AATAAATT
  • CAATAATGCTACACATCCCAAATTTTTTATCCCAAAAAGTTATCTCAAATGATGTGGCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAAATTA                                                        G    TATCAAT          GATAA      TA    AC
         CAATAATGCTACACATCCCAAATTTTTTATCCCAAAAAGTTATCTCAAATGATGTG CATT       TGGTTGGTGA     TACAAT  GTTC  
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||     ||||||  ||||   
         GTTATTACGATGTGTAGGGTTTAAAGAATAGGGTTTTTCAATAGGGTTTACTACAC GTAA       ACCAACTATT     ATGTTA  TAGG  
ATTAAATAA                                                        A    TTAACTC          AATAA      --    TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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